Coffee Break: End-of-the-Week Thoughts on Science and Other Matters Arising

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Good afternoon and welcome to my first rough draft of Coffee Break, which will be an ongoing part of our week here. This will be a project with an unknown evolutionary trajectory, depending on feedback from the community. Comments, criticism, and reader input are most welcome. Details are still in the making, so patience is requested. –KLG

Part the First: AI Kills Your Critical Thinking Skills. Medical students are very enthusiastic about AI – Algorithmic Intelligence (yes, that is what I call it, because I can). I remember very well the moment two years ago when ChatGPT popped its head up and students in my tutorial group were fairly thrilled at the bright, shiny new shortcut to knowledge right there in their phones. They have gone from books and paper to laptops to tablets to a phone that can be carried in one hand, all the time. The shadow medical curriculum now is the large thing casting shadows. Is this a good thing? Or a bad thing? Or just a thing? I tend to believe (OK, hope for) the latter. However, I do know from first-hand experience with students that the further they are away from their data (in this case the knowledge required to become a wise and effective physician) the more likely they are to miss the point entirely. This is not something we want in a physician, scientist, historian, psychologist, or philosopher.

Recently while I was thinking about how to improve our curriculum for preclinical medical students, up pops a link from Gizmodo, Microsoft Study Finds Relying on AI Kills Your Critical Thinking Skills. Key Point: “Over the course of the study, a pattern revealed itself: the more confident the worker was in the AI’s capability to complete the task, the more often they could feel themselves letting their hands off the wheel.” That is exactly what Elon Musk and others want us to do, isn’t it! So, whatever could be the problem?

The underlying study by a group of scientists at Carnegie-Mellon University (nice pair of American Oligarchs, those two, but they did leave a tangible legacy – especially the first) and at Microsoft in Cambridge (not the one across the river from Boston) is here: The Impact of Generative AI on Critical Thinking: Self-Reported Reductions in Cognitive Effort and Confidence Effects From a Survey of Knowledge Workers. The results are “self-reported,” which is probably the only kind of data available for this project. The “user’s task-specific self-confidence and confidence in GenAI are predictive of whether critical thinking is enacted…” I thought the purpose of GenAI is to vitiate the need for critical thinking, but on the other hand, this study does “reveal new design challenges and opportunities for developing GenAI tools for knowledge work.” The words “knowledge” and “work” are doing a lot of work here but we shall see. The scientists at Microsoft might be on to something. If it doesn’t kill us first.

In the meantime, we would do well to remember T.S. Eliot from The Rock:

Where is the Life we have lost in living?
Where is the wisdom we have lost in knowledge?
Where is the knowledge we have lost in information?
The cycles of Heaven in twenty centuries
Bring us farther from God and nearer to the Dust.

Part the Second: Progress on COVID-19? in Differential protection against SARS-CoV-2 reinfection pre- and post-Omicron. This open access paper is very technical but somewhat promising. From the Abstract:

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly evolved over short timescales, leading to the emergence of more transmissible variants such as Alpha and Delta…the Omicron variant marked a major shift (and) raised concerns regarding (the) potential impact on immune evasion, disease severity and the effectiveness of vaccines and treatments…Before Omicron, natural infection provided strong and durable protection against reinfection…(but)…during the Omicron era, protection was robust only for those recently infected, declining rapidly over time and diminishing within a year. These results demonstrate that SARS-CoV-2 immune protection is shaped by a dynamic interaction between host immunity and viral evolution, leading to contrasting reinfection patterns before and after Omicron’s first wave. This shift in patterns suggests a change in evolutionary pressures, with intrinsic transmissibility driving adaptation pre-Omicron and immune escape becoming dominant post-Omicron, underscoring the need for periodic vaccine updates to sustain immunity. (emphasis added)

Yes, we know that. We also know that durable immunity to coronaviruses has been a chimera, so far, in birds, cats, and people. One thing about this work, though. The first thing to do when reading a biomedical research paper, even before reading the abstract, is to check the acknowledgments. The authors seem to have had access to a good database and they were not required to grub for grants to get the work done. One might also note that Al-Jazeera is also funded by the government of Qatar, whose leader seems after all these years to allow the reporters and editors to do their jobs. But of course, YMMV, especially around these parts.

Part the Third: The New and Improved Department of Health and Human Services. I looked, the Secretary of Health and Human Services has generally been a politician of one sort or another, going back the when it was the Department of Health, Education, and Welfare (two out of three are bad words today; no wonder the name was changed). But few of them have been quite the lightning rod that is the current incumbent. He has quite a following among citizens of various stripes, and he is on a mission. The physicians at Science-Based Medicine are not favorably impressed, however. Based on my priors, they are correct.

The Chinese proverb, “May you live in interesting times.” is probably neither Chinese nor a proverb. Its most likely origin lies in something said by Sir Austen Chamberlain, half-brother to the much more famous Neville. But I am getting a bit tired of this, in a working life that has been coextensive with the rise of the Neoliberal Dispensation. Nevertheless, “You are not obligated to complete the work, but neither are you free to desist from it.” (Pirkei Avot: Ethics of Our Fathers, 2:21). We have work to do!

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14 comments

    1. amfortas the hippie

      aye.
      but do give yerself time to grow into it(large waders, and all).

      what Lambert calls “workflow”, etc, i call “set and setting”,lol.
      i hafta actively set aside a period of time to sit down and write(i mean, besides my random comments)…ritualise it, turn off fone,look at the weather forecast, etc.
      hard to do, even for me…so much work, so little body to do it,lol.
      and i set my own agenda and schedule.
      cripplehood taught me the value of some structure…preferably predictable…in ones ‘works and days’…

      but i reckon you’ve got the chops,lol.
      (and are likely better organised than i ever have been)
      i’m pullin fer ya.

      Reply
  1. clarky90

    Re; “Where is the Life we have lost in living?”

    120 years ago, there were no freezers or refrigerators in peoples homes. Maybe an icebox if you could afford to buy ice?

    So, people preserved food by drying, fermenting, pickling, salting (“the pork barrel” was a barrel filled with salted pork)….smoking… burying in root cellars…

    There were no “use by dates”. We used our knowledge, hunger, sense of smell and vision to decide what to eat, or not to eat.

    The end result was we were surrounded by yeast, bacteria, fungi ……. in our food, in our guts and on our skin. And this is how we were engineered by God, or by god or by evolution…. to be literally swimming in life. (like a fish in water)

    The salinity of the ocean is about 3.5% salt. When I make sauerkraut, I use between 2% and 4% salt of the total weight. (water and cabbage) wow

    Sauerkraut, natto, kvas, beer, kefir, yogurt, kimchi……..

    This is a very good “how to” youtube channel

    https://www.youtube.com/@CleanFoodLiving

    Reply
  2. Sub-Boreal

    Welcome (back) and thanks for agreeing to serve the NC community in this way. I’ve enjoyed your previous contributions, especially for the way in which they’ve conveyed the real world conditions prevailing in academic science. I’m retired from academia myself, though not in a biomedical field, and your descriptions of the way that things actually work always rang pretty true.

    Following on from your item #2, this newest posting from the “Independent SAGE continues” got my attention: The rare flip-side of the immunological coin: Post-vaccine syndrome (PVS).

    I don’t have the background to evaluate the technical content, so the part that impressed me came at the end where it deals with how to handle findings of rare but severe side-effects, when any such discussion occurs in a polluted information environment (my wording not theirs) full of bad-faith actors. My own career was in a field with a lot less public visibility, so I never had to deal with such dilemmas. If you have the time, I’d be interested in your take on this.

    Reply
  3. dougie

    Wow. If this is indeed your “first rough draft”, we are all in store for an incredible ride! You knocked it out of the park, IMNSFHO. Looking forward to next week.

    Reply
  4. ambrit

    Thank you for stepping up to contribute concerning a field that is literally “life or death” for many of us. (I speak as a late sixty-something who fits many of the ‘markers’ for being “Death prone.”)
    Stay safe while helping the rest of us do the same.

    Reply
  5. matt

    i recently took to using chatgtp to help with the coding portion of my homework. it gave me incredibly wrong answers that in no way matched what i was trying to model. but it was helpful in giving me the proper syntax, as it has been a few years since i worked in python.
    i agree that the further one gets from the data, the more one will miss the point. it’s really important to know the physical meanings of numbers. i dont think this is just an issue in the medical field either. bit of an allegory of the cave situation. the more you look at representations of things (be it data, essays, or shadows on the wall), the less you look at what’s actually happening outside the cave. people love to blame phone for everything wrong with society, and while i don’t think it’s to blame for everything, i think looking at representations instead of reality all day is really bad for the mind.

    Reply
  6. Skip Intro

    Thanks KLG!
    While we’re musing on the flailings of AI, I’ll observe that our Large Language Models are expert at generating convincing and plausible statements that may not be factual. Some call these hallucinations, but all the LLM output is hallucination, some of it just accords with our knowledge.
    So there really is a problem of trust. If you don’t know enough to know if the information inaccurate, then you can’t trust it, if you do, you don’t need it.

    Reply

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